PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039166
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 472aa    MW: 52990.4 Da    PI: 4.2577
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039166genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.91.2e-77904671374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lvelL+++ + v+++d  +a +lL++    +s  g +++qRl++yf +AL  r++++++++             +++   a+ + s + P++ +s++ 
  Lus10039166  90 LVELLIAASHKVDAQDYDQAATLLEKCISSSSDGGdSSIQRLVSYFSQALLDRINSQSPGII------------MDDP--ATFMISSCLPTVLVSQFC 173
                  6899*************************999999679******************777776............2222..223467899********* PP

         GRAS  98 aNqaIleavegeervHiiD.fdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                    qaI+++v+g++rvH+iD f+i  G+QW  L+ aLas + ++   l++T+vg  ++     +++++eetg++L++fAe+l+ pf+f++++ ++l+dl
  Lus10039166 174 GIQAIVDEVDGAKRVHVIDlFSIRSGAQWTILISALASSSnRSIRALKLTAVGLISYIdydrDQDTIEETGNKLERFAETLDFPFSFRAVMISELNDL 271
                  *******************77****************88746677*********88878999************************************ PP

         GRAS 190 eleeL.......rvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                  + ++L       +         +E+++V l +   +l ++s s+e   d+++++vk+++P ++vv+e ea+hns+ F+ rf+eal ++ a f+++ea 
  Lus10039166 272 NQDMLltlhndyE--DnedeakEEVMVVYLEYVPRQLIRSSPSTEF--DKLMEVVKGINPSIMVVSEIEANHNSSAFAYRFMEALFFFGAYFECIEAC 365
                  ****976666550..1455565888899999999999988888877..************************************************** PP

         GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsv 370
                  + + + +r+ vE+++ g++i+++va eg+er  r+  l+ Wr+ +e++G+++++++++  +qa+ ++ +v   +g  +v+ +++slv gWk+ pL sv
  Lus10039166 366 MDNGETKRAEVEAMWCGESIRSIVAFEGEERAVRNVPLRGWRMFFERFGMEEIEIGSNCLEQANVVIDNVVgCEGlCTVDMDEKSLVVGWKGMPLHSV 463
                  *********************************************************************998899899******************** PP

         GRAS 371 SaWr 374
                  SaW+
  Lus10039166 464 SAWK 467
                  ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.9564445IPR005202Transcription factor GRAS
PfamPF035144.3E-7590467IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDNINNSSSA TDHDHDRHQP RSTVDPFICY FNYLSNQQQE VSSFSKINHL HDHDQHQLSS  60
EEIIRIAGAR FLNDNDVDSL SDEDTKKVDL VELLIAASHK VDAQDYDQAA TLLEKCISSS  120
SDGGDSSIQR LVSYFSQALL DRINSQSPGI IMDDPATFMI SSCLPTVLVS QFCGIQAIVD  180
EVDGAKRVHV IDLFSIRSGA QWTILISALA SSSNRSIRAL KLTAVGLISY IDYDRDQDTI  240
EETGNKLERF AETLDFPFSF RAVMISELND LNQDMLLTLH NDYEDNEDEA KEEVMVVYLE  300
YVPRQLIRSS PSTEFDKLME VVKGINPSIM VVSEIEANHN SSAFAYRFME ALFFFGAYFE  360
CIEACMDNGE TKRAEVEAMW CGESIRSIVA FEGEERAVRN VPLRGWRMFF ERFGMEEIEI  420
GSNCLEQANV VIDNVVGCEG LCTVDMDEKS LVVGWKGMPL HSVSAWKFIG T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2710046713375GRAS family transcription factor containing p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-42RGA-like 2